2024

1. Singh D, Zhao H, Gupta SK, Kumar Y, Kim J, Pawar PA. Characterization of Arabidopsis eskimo1 reveals a metabolic link between xylan O-acetylation and aliphatic glucosinolate metabolism. Physiol Plant. 2024 Nov-Dec;176(6):e14618. doi: 10.1111/ppl.14618. PMID: 39542838
2. Tanwar J, Ahuja K, Sharma A, Sehgal P, Ranjan G, Sultan F, Agrawal A, D'Angelo D, Priya A, Yenamandra VK, Singh A, Raffaello A, Madesh M, Rizzuto R, Sivasubbu S, Motiani RK. Mitochondrial calcium uptake orchestrates vertebrate pigmentation via transcriptional regulation of keratin filaments PLoS Biol. 2024 Nov 11;22(11):e3002895. doi: 10.1371/journal.pbio.3002895. Online ahead of print. PMID: 39527653
3. Yadav S, Preethi V, Dadi S, Seth CS, G K, Chandrashekar BK, Vemanna RS. Small chemical molecules regulating the phytohormone signalling alter the plant's physiological processes to improve stress adaptation, growth and productivity. Physiol Mol Biol Plants. 2024 Oct;30(10):1593-1610. doi: 10.1007/s12298-024-01514-w. Epub 2024 Oct 3. PMID: 39506995
4. Ashique S, Biswas A, Mohanto S, Srivastava S, Hussain MS, Ahmed MG, Subramaniyan V. New Microbes New Infect. 2024 Oct 10;62:101501. doi: 10.1016/j.nmni.2024.101501. eCollection 2024 Dec. PMID: 39497912
5. Singh A, Majee P, Mishra L, Prajapat SK, Sharma TK, Kalia M, Kumar A. Role of RNA G-Quadruplexes in the Japanese Encephalitis Virus Genome and Their Recognition as Prospective Antiviral Targets..ACS Infect Dis. 2024 Oct 22. doi: 10.1021/acsinfecdis.4c00507. Online ahead of print. PMID: 39436355
6. Ray P, Chandran D. Spray inoculation and image analysis-based quantification of powdery mildew disease severity on pea leaves.MethodsX. 2024 Sep 25;13:102980. doi: 10.1016/j.mex.2024.102980. eCollection 2024 Dec. PMID: 39430780
7. Jagannadham PTK, Anbalagan T, Balyan S, Satheesh V, Kamde SA, Kuthe JU, Deshpande CP, Murkute AA. Whole genome resequencing data of four Indian mandarin genotypes: Extending our understanding of citrus genomics..Data Brief. 2024 Sep 7;57:110896. doi: 10.1016/j.dib.2024.110896. eCollection 2024 Dec. PMID: 39429748
8. Pandey AD, Sharma G, Sharma A, Vrati S, Nair DT. SMCVdb: a database of experimental cellular toxicity information for drug candidate molecules.Database (Oxford). 2024 Oct 18;2024:baae100. doi: 10.1093/database/baae100. PMID: 39423320
9. Gaur KK, Asuru TR, Srivastava M, Singh N, Purushotham N, Poojary B, Das B, Bhattacharyya S, Asthana S, Guchhait P. 7D, a small molecule inhibits dengue infection by increasing interferons and neutralizing-antibodies via CXCL4:CXCR3:p38:IRF3 and Sirt1:STAT3 axes respectively.EMBO Mol Med. 2024 Oct;16(10):2376-2401. doi: 10.1038/s44321-024-00137-8. Epub 2024 Sep 16. PMID: 39284947
10. Kumari M, Bisht KS, Ahuja K, Motiani RK, Maiti TK. Glycation Produces Topologically Different α-Synuclein Oligomeric Strains and Modulates Microglia Response via the NLRP3-Inflammasome Pathway.ACS Chem Neurosci. 2024 Sep 25. doi: 10.1021/acschemneuro.4c00057. Online ahead of print. PMID: 39320935
11. Gaur KK, Asuru TR, Srivastava M, Singh N, Purushotham N, Poojary B, Das B, Bhattacharyya S, Asthana S, Guchhait P.7D, a small molecule inhibits dengue infection by increasing interferons and neutralizing-antibodies via CXCL4:CXCR3:p38:IRF3 and Sirt1:STAT3 axes respectively.EMBO Mol Med. 2024 Sep 16. doi: 10.1038/s44321-024-00137-8. Online ahead of print. PMID: 39284947
12. Chatterjee O, Jana J, Panda S, Dutta A, Sharma A, Saurav S, Motiani RK, Weisz K, Chatterjee S.Remodeling Ca2+ dynamics by targeting a promising E-box containing G-quadruplex at ORAI1 promoter in triple-negative breast cancer.Cell Calcium. 2024 Aug 12;123:102944. doi: 10.1016/j.ceca.2024.102944. Online ahead of print. PMID: 39191092 PMID: 39175689
13. Kumari S, Bandyopadhyay B, Singh A, Aggarwal S, Yadav AK, Vikram NK, Guchhait P, Banerjee A. Extracellular vesicles recovered from plasma of severe dengue patients induce CD4+ T cell suppression through PD-L1/PD-1 interaction.mBio. 2023 Dec 19;14(6):e0182323. doi: 10.1128/mbio.01823-23. Epub 2023 Nov 20. PMID: 37982662
14. Deb A, Nagpal S, Yadav RK, Thakur H, Nair D, Krishnan V, Vrati S. Japanese encephalitis virus NS5 protein interacts with nucleolin to enhance the virus replication.J Virol. 2024 Jul 30:e0085824. doi: 10.1128/jvi.00858-24. Online ahead of print. PMID: 39078257
15. Chauhan N, Gaur KK, Asuru TR, Guchhait P. Dengue virus: pathogenesis and potential small molecule antivirals.Biosci Rep. 2024 Jun 25:BSR20240134. doi: 10.1042/BSR20240134. Online ahead of print. PMID: 39051974.
16. Peter SC, Kalakoti Y, Sundar D. Identifying High-Quality Leads among Screened Anticancerous Compounds Using SMILES Representations.ACS Omega. 2024 Jun 28;9(28):30645-30653. doi: 10.1021/acsomega.4c02801. eCollection 2024 Jul 16. PMID: 39035912
17. Sharma A, Zehra A, Mathew SJ. Myosin heavy chain-perinatal regulates skeletal muscle differentiation, oxidative phenotype and regeneration.FEBS J. 2024 Jul;291(13):2836-2848. doi: 10.1111/febs.17085. Epub 2024 Feb 15. PMID: 38358038
18. Majumder S, Srivastava M, Alam P, Saha S, Kumari R, Chand AK, Asthana S, Sen S, Maiti TK. Hotspot site microenvironment in the deubiquitinase OTUB1 drives its stability and aggregation.J Biol Chem. 2024 Jun;300(6):107315. doi: 10.1016/j.jbc.2024.107315. Epub 2024 Apr 23. PMID: 38663827
19. Prajapati A, Palva A, von Ossowski I, Krishnan V. The crystal structure of the N-terminal domain of the backbone pilin LrpA reveals a new closure-and-twist motion for assembling dynamic pili in Ligilactobacillus ruminis.Acta Crystallogr D Struct Biol. 2024 Jul 1;80(Pt 7):474-492. doi: 10.1107/S2059798324005114. Epub 2024 Jun 27. PMID: 38935340
20. Chaudhary M, Kumar A, Bala Sharma K, Vrati S, Sehgal D.In silico identification of chikungunya virus replication inhibitor validated using biochemical and cell-based approaches.FEBS J. 2024 Jun;291(12):2656-2673. doi: 10.1111/febs.17066. Epub 2024 Feb 1. PMID: 38303163
21. Dhillon AK, Dudhe PE, Majumdar S, Barman S, Ghosh D, Dhanasekaran K, Siddhanta S.Imaging of intracellular protein aggregates through plasmon-assisted clusteroluminescence.Nanoscale. 2024 Jun 12. doi: 10.1039/d4nr01803f. Online ahead of print. PMID: 38864278
22. Chaudhari AA, Sharma AM, Rastogi L, Dewangan BP, Sharma R, Singh D, Sah RK, Das S, Bhattacharjee S, Mellerowicz EJ, Pawar PA. Modifying lignin composition and xylan O-acetylation induces changes in cell wall composition, extractability, and digestibility. Biotechnol Biofuels Bioprod. 2024 May 31;17(1):73. doi: 10.1186/s13068-024-02513-5. PMID: 38822388 Free PMC article
23. Kumar V, Sari AN, Gupta D, Ishida Y, Terao K, Kaul SC, Vrati S, Sundar D, Wadhwa R.Anti-COVID-19 Potential of Withaferin-A and Caffeic Acid Phenethyl Ester. Curr Top Med Chem. 2024;24(9):830-842. doi: 10.2174/0115680266280720231221100004. PMID: 38279743
24. Sarkar R, Chhabra S, Tanwar M, Agarwal N, Kalia M.Japanese encephalitis virus hijacks ER-associated degradation regulators for its replication. J Gen Virol. 2024 May;105(5). doi: 10.1099/jgv.0.001995. PMID: 38787366
25. Yadav P, Rana K, Chakraborty R, Khan A, Mehta D, Jain D, Aggarwal B, Jha SK, Dasgupta U, Bajaj A.Engineered nanomicelles targeting proliferation and angiogenesis inhibit tumour progression by impairing the synthesis of ceramide-1-phosphate. Nanoscale. 2024 May 13. doi: 10.1039/d3nr04806c. Online ahead of print. PMID: 38739006
26. Clement PC, Sapam T, Nair DT.(2024). A conserved polar residue plays a critical role in mismatch detection in A-family DNA polymerases Int J Biol Macromol. 2024 Apr 30:131965. doi: 10.1016/j.ijbiomac.2024.131965. Online ahead of print. PMID: 38697428.
27. Gaur P, Rajendran Y, Srivastava B, Markandey M, Fishbain-Yoskovitz V, Mohapatra G, Suhail A, Chaudhary S, Tyagi S, Yadav SC, Pandey AK, Merbl Y, Bajaj A, Ahuja V, Srikanth C.Rab7-dependent regulation of goblet cell protein CLCA1 modulates gastrointestinal homeostasis. Elife. 2024 Apr 9;12:RP89776. doi: 10.7554/eLife.89776. PMID: 38593125
28. Dawane A, Deshpande S, Vijayaraghavreddy P, Vemanna RS. Polysome-bound mRNAs and translational mechanisms regulate drought tolerance in rice. Plant Physiol Biochem. 2024 Mar 18;208:108513. doi: 10.1016/j.plaphy.2024.108513. Online ahead of print. PMID: 38513519
29. Chauhan M, Arshi SA, Narayanan N, Arfin HU, Sharma A. mechanistic insight on how Compromised Hydrolysis of Triacylglycerol 7 (CHT7) restrains the involvement of it's CXC domain from quiescence repression. Int J Biol Macromol. 2024 Mar 12:130844. doi: 10.1016/j.ijbiomac.2024.130844. Online ahead of print. PMID: 38484809
30. Thakral V, Raturi G, Sudhakaran S, Mandlik R, Sharma Y, Shivaraj SM, Tripathi DK, Sonah H, Deshmukh R. Silicon, a quasi-essential element: Availability in soil, fertilizer regime, optimum dosage, and uptake in plants. Plant Physiol Biochem. 2024 Feb 22;208:108459. doi: 10.1016/j.plaphy.2024.108459. Online ahead of print. PMID: 38484684
31. Yadav P, Rana K, Nardini V, Khan A, Pani T, Kar A, Jain D, Chakraborty R, Singh R, Jha SK, Mehta D, Sharma H, Sharma RD, Deo SVS, Sengupta S, Patil VS, Faccioli LH, Dasgupta U, Bajaj A. Engineered nanomicelles inhibit the tumour progression via abrogating the prostaglandin-mediated immunosuppression. J Control Release. 2024 Mar 13;368:548-565. doi: 10.1016/j.jconrel.2024.03.009. Online ahead of print. PMID: 38462044
32. Sharma J, Mondal S, Kumari M. Mitochondrial calcium: An essential element for skeletal muscle performance and function. J Physiol. 2024 Mar 4. doi: 10.1113/JP286218. Online ahead of print. PMID: 38439553 No abstract available.
33. Shukla S, Murmu S, Mora T, Dhanasekaran K, Roy RP. Unravelling HDAC Selectivity for Erasing Acetyl Mark on Lys-5 of Histone H2B. Chembiochem. 2024 Mar 1;25(5):e202300875. doi: 10.1002/cbic.202300875. Epub 2024 Feb 7. PMID: 38251898
34. Kaur E, Agrawal R, Arun R, Madhavan V, Srivastava V, Kumar D, Rath PP, Kumar N, Vedagopuram S, Pandey N, Priya S, Legembre P, Gourinath S, Bajaj A, Sengupta S. Small molecules that disrupt RAD54-BLM interaction hamper tumor proliferation in colon cancer chemoresistance models. J Clin Invest. 2024 Feb 29:e161941. doi: 10.1172/JCI161941. Online ahead of print. PMID: 38421735
35. Singh A, Ghosh R, Asuru TR, Prajapat SK, Joshi G, Gaur KK, Shrimali NM, Ojha A, Vikram NK, Poncz M, Kalia M, Guchhait P. Inhibition of cellular activation induced by platelet factor 4 via the CXCR3 pathway ameliorates Japanese encephalitis and dengue viral infections. J Thromb Haemost. 2024 Mar;22(3):818-833. doi: 10.1016/j.jtha.2023.11.015. Epub 2023 Nov 27. PMID: 38029855
36. Kar A, Agarwal S, Singh A, Bajaj A, Dasgupta U. Insights into molecular mechanisms of chemotherapy resistance in cancer. Transl Oncol. 2024 Feb 10;42:101901. doi: 10.1016/j.tranon.2024.101901. Online ahead of print. PMID: 38341963
37. Safwan SM, Kumar N, Mehta D, Singh M, Saini V, Pandey N, Khatol S, Batheja S, Singh J, Walia P, Bajaj A. Xanthone Derivatives Enhance the Therapeutic Potential of Neomycin against Polymicrobial Gram-Negative Bacterial Infections. ACS Infect Dis. 2024 Feb 9;10(2):527-540. doi: 10.1021/acsinfecdis.3c00471. Epub 2024 Jan 31. PMID: 38294409
38. Kalita B, Sahu S, Bharadwaj A, Panneerselvam L, Martinez-Cebrian G, Agarwal M, Mathew SJ. The Wnt-pathway corepressor TLE3 interacts with the histone methyltransferase KMT1A to inhibit differentiation in Rhabdomyosarcoma. Oncogene. 2024 Feb;43(7):524-538. doi: 10.1038/s41388-023-02911-3. Epub 2024 Jan 4. PMID: 38177411
39. Pal, G., Ingole, K.D., Yavvari, P.S., Verma, P., Kumari, A., Chauhan, C. Chaudhary D, Srivastava A, Bajaj A, Vemanna RS Exogenous application of nanocarrier-mediated double-stranded RNA manipulates physiological traits and defence response against bacterial diseases. Molecular Plant Pathology, 2024, ,25, e13417.
40. Kaushik JK, Krishnan V, von Ossowski I. Editorial: Functional insights into the probiotic mechanisms of surface protein action. Front Microbiol. 2024 Jan 5;14:1355529. doi: 10.3389/fmicb.2023.1355529. eCollection 2023. PMID: 38249455 Free PMC article.
41. Kumar N, Sharma S, Kaushal PS. Cryo- EM structure of the mycobacterial 70S ribosome in complex with ribosome hibernation promotion factor RafH. Nat Commun. 2024 Jan 20;15(1):638. doi: 10.1038/s41467-024-44879-y. PMID: 38245551 Free PMC article.
42. Rawat S, Kumar S, Duggal S, Banerjee A. Phenotypic alteration by dengue virus serotype 2 delays neutrophil apoptosis and stimulates the release of prosurvival secretome with immunomodulatory functions. J Leukoc Biol. 2024 Jan 19;115(2):276-292. doi: 10.1093/jleuko/qiad133. PMID: 37890093
43. Agarwal S, Saha S, Ghosh R, Sarmadhikari D, Asthana S, Maiti TK, Khadgawat R, Guchhait P. Elevated glycosylation of CD36 in platelets is a risk factor for oxLDL-mediated platelet activation in type 2 diabetes. FEBS J. 2024 Jan;291(2):376-391. doi: 10.1111/febs.16976. Epub 2023 Oct 27. PMID: 37845743
44. Prajapat SK, Mishra L, Khera S, Owusu SD, Ahuja K, Sharma P, Choudhary E, Chhabra S, Kumar N, Singh R, Kaushal PS, Mahajan D, Banerjee A, Motiani RK, Vrati S, Kalia M. Methotrimeprazine is a neuroprotective antiviral in JEV infection via adaptive ER stress and autophagy. EMBO Mol Med. 2024 Jan;16(1):185-217. doi: 10.1038/s44321-023-00014-w. Epub 2024 Jan 2. PMID: 38177535
45. Arora A, Singh M, Saini V, Mehta D, Safwan SM, Pandey N, Verma V, Bajaj A. Cholic Acid-Derived Gemini Amphiphile Can Eradicate Interkingdom Polymicrobial Biofilms and Wound Infections. ACS Infect Dis. 2024 Jan 12;10(1):138-154. doi: 10.1021/acsinfecdis.3c00369. Epub 2023 Dec 26. PMID: 38146853
46. Subramani C, Sharma G, Chaira T, Barman TK. High content screening strategies for large-scale compound libraries with a focus on high-containment viruses. Antiviral Res. 2024 Jan;221:105764. doi: 10.1016/j.antiviral.2023.105764. Epub 2023 Nov 24. PMID: 38008193 Review.
47. Kupani M, Pandey RK, Vashisht S, Singh S, Prajapati VK, Mehrotra S. Prediction of an immunogenic peptide ensemble and multi-subunit vaccine for Visceral leishmaniasis using bioinformatics approaches. Heliyon. 2023 Nov 14;9(12):e22121. doi: 10.1016/j.heliyon.2023.e22121. eCollection 2023 Dec. PMID: 38196838
48. Duggal S, Rawat S, Siddqui G, Vishwakarma P, Samal S, Banerjee A, Vrati S. Dengue virus infection in mice induces bone marrow myeloid cell differentiation and generates Ly6Glow immature neutrophils with modulated functions. J Leukoc Biol. 2024 Jan 5;115(1):130-148. doi: 10.1093/jleuko/qiad099. PMID: 37648666
49. Sharma KB, Chhabra S, Kalia M. Japanese Encephalitis Virus-Infected Cells. Subcell Biochem. 2023;106:251-281. doi: 10.1007/978-3-031-40086-5_10. PMID: 38159231