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Dr. Sam J Mathew

Associate Professor
E-mail: sjmathew at rcb dot res dot in

  • PhD 2006, University of Cologne, Germany
  • Postdoc at University of Utah, USA
  • Associate Professor at RCB since 2019

Mammalian development, stem cells, regeneration and disease

We are interested in deciphering the mechanisms underlying mammalian embryonic development, stem cell mediated regeneration and diseases associated with abnormal development and regeneration. The cells in the developing embryo or regenerating tissues undergo processes such as specification, migration, proliferation, differentiation and apoptosis in a coordinated manner. We are trying to understand the signals controlling these cellular processes and their regulation. During the process of differentiation, cells undergo changes in morphology and cellular activity, based on their lineage and functional requirements. This is best illustrated in the case of the mammalian skeletal muscle, where the undifferentiated stem cells are small, round and mononuclear, whereas the mature, differentiated cells are large, elongated and multinuclear.

One gene family crucial to skeletal muscle differentiation are the skeletal muscle myosin heavy chains, expressed specifically by the skeletal muscle, with different members expressed at different developmental stages, adult life, and during muscle injury or disease. One such myosin heavy chain is myosin heavy chain-embryonic, encoded by the Myh3 gene. By generating knockout mice lacking Myh3 and employing mouse genetics, we have characterized the embryonic and perinatal functions of myosin heavy chain-embryonic in the skeletal muscle (Agarwal et al, Development 2020). Mutations in specific myosins have been reported to cause congenital diseases such as contracture syndromes, myopathies etc, and our studies using mouse models should lead to a mechanistic understanding of these diseases and possible therapeutic strategies to treat them.

Another major area of focus is to discover the transcriptional (e.g. transcriptional repressors), post-transcriptional (e.g. microRNAs), translational (e.g. signaling pathways like the Wnt/beta-Catenin pathway), and post-translational (e.g. protein modifications such as ubiquitylation) regulatory mechanisms that control differentiation, using in vitro and in vivo strategies. We have found that the corepressor Transducin-like Enhancer of Split 4 (TLE4) is a crucial regulator of muscle stem cell quiescence and its downregulation is required for the stem cells to enter differentiation (Agarwal et al, Journal of Cell Science 2022).

We are also interested in the biology of cancer, specifically investigating a tumor type called rhabdomyosarcoma, wherein the tumor cells exhibit characteristics of skeletal muscle cells. We are trying to identify and understand the roles of signaling pathways that are dysregulated in this type of cancer, which could lead to potential therapeutic interventions. Previously, we uncovered the role of the receptor tyrosine kinase MET and its interacting protein SPRY2 in rhabdomyosarcoma tumorigenic potential (Saini et al, Cell Death and Disease 2018).

  • Wellcome-DBT Intermediate Fellow
  • Aparna Rai
    MSc student
    aparna.rai@rcb.res.in
  • Mahima Kumari
    Junior Research Fellow
    mahima.kumari@rcb.res.in
  • Aatifa Zehra
    Junior Research Fellow
    aatifa.zehra@rcb.res.in
  • Jaydeep Sharma
    Junior Research Fellow
    jaydeep.sharma@rcb.res.in
  • Subhashni Sahu
    Senior Research Fellow
    subhashni.sahu@rcb.res.in
  • Anushree Bharadwaj
    Senior Research Fellow
    anushree@rcb.res.in
  • Akashi Parashar
    Senior Research Fellow
    akashi.parashar@rcb.res.in
  • Pankaj Kumar
    Senior Research Fellow
    pankaj.kumar@rcb.res.in
  • Jagriti Singh
    Junior Research Fellow (Project)
    jagriti.singh@rcb.res.in
  • Preedia Babu
    Research Associate I (Project)
    preedia.babu@rcb.res.in
  • Lakshmikanthan Panneerselvam
    Research Associate I (Project)
    lakshmikanthan.p@rcb.res.in
  • Masum Saini
    India Alliance Early Career Fellow
    masum@rcb.res.in

Alumni

  • Shreyasi Das (PhD Student and Senior Research Fellow 2015-2022) – Currently Postdoctoral Fellow with Dr. Valerie Horsley at Yale University, New Haven, Connecticut, USA.
  • Tanushri Dargar (MSc student) - Currently PhD candidate at Institut NeuroMyoGene, Faculte de medicine, Lyon, France.
  • Megha Agarwal (PhD Student and Senior Research Fellow 2014-2021) – Currently Postdoctoral Fellow with Dr. Casey Gifford at the Stanford University School of Medicine, Stanford, USA.
  • Bhargab Kalita (SERB National Postdoctoral Fellow and Research Associate 2018-2021) – Currently Postdoctoral Fellow with Prof. Brian Dynlacht at the New York University School of Medicine, New York, USA
  • Shashank Khare (Senior Research Fellow 2019) – Currently PhD candidate at Institut Européen de Chimie et Biologie (IECB), Bordeaux, France.
  • Nimisha Mishra (Senior Research Fellow 2019) – Currently PhD candidate at the International Centre for Genetic Engineering and Biotechnology (ICGEB), New Delhi, India.
  • Aakanksha Verma (Junior Research Fellow 2016-2018) – Currently PhD candidate at Weizmann Institute of Science, Rehovot, Israel.
  • Shlok Jindal (Junior Research Fellow 2016-2017) – Currently PhD candidate at the Indian Institute of Technology (IIT), Roorki, India.
  • Amit Kumar (Postdoctoral Fellow 2014-2016) – Currently Postdoctoral Fellow with Dr. Dinesh Rao at the David Geffen School of Medicine, University of California Los Angeles, California, USA.
  • Ankur Kumar (Project Assistant 2015-2016) – Currently PhD candidate at the Indian Institute of Technology (IIT), Mandi, India.
  • Shivangi Srivastava (Project Assistant 2014-2015) – Currently PhD candidate at Department of Biology and Biochemistry, University of Houston, Texas, USA.
  1. Kumar, P., Zehra, A., Saini, M., and Mathew, S. J. (2023). Zeb1 and Tle3 are trans-factors that differentially regulate the expression of myosin heavy chain-embryonic and skeletal muscle differentiation. FASEB Journal 37(8):e23074. doi: 10.1096/fj.202201698RR
  2. Agarwal M, Bharadwaj A, Mathew S.L. (2022) TLE4 regulates muscle stem cell quiescence and skeletal muscle differentiation Journal of Cell Science, 135:4
  3. Pradhan AK, G. Kandasamy, U. Chatterjee, A. Bharadwaj, S.J. Mathew, R.J. Dohmen, and Palanimurugan R. (2021) Ribosome-associated quality control mediates degradation of the premature translation termination product Orf1p of ODC antizyme mRNA. FEBS Letters 595: 2015-2033. doi: 10.1002/1873-3468.14147
  4. Agarwal M, A. Sharma, P. Kumar, A. Kumar, and S.J. Mathew. 2020. The people behind the papers. Development 147(7). pii: dev190025. doi: 10.1242/dev.190025.
  5. Agarwal M, A. Sharma, P. Kumar, A. Kumar, A. Bharadwaj, M. Saini, G. Kardon, and S.J. Mathew. (2020) Myosin heavy chain-embryonic regulates skeletal muscle differentiation during mammalian development. Development 147(7). pii: dev184507. doi: 10.1242/dev.184507.
  6. Das S, P Kumar, A Verma, TK Maiti, and Mathew SJ (2019) Myosin heavy chain mutations that cause Freeman-Sheldon syndrome lead to muscle structural and functional defects in Drosophila Developmental Biology | 449(2): 90-98.
  7. M Saini , A Verma, SJ Mathew. (2018) SPRY2 is a novel MET interactor that regulates metastatic potential and differentiation in rhabdomyosarcoma. Cell Death and Disease 9:237
  8. Agarwal M, Kumar P, Mathew SJ (2015)  The Groucho/Transducin-like enhancer of split protein family in animal development. IUBMB Life 67:472.
  9. Keefe AC, Lawson JA, Flygare SD, Fox ZD, Colasanto MP, Mathew SJ, Yandell M, Kardon G. (2015) Muscle stem cells contribute to myofibres in sedentary adult mice. Nature Communications 14;6:7087 (Recommended by Faculty of 1000).
  10. Mathew SJ, Rembold M, Leptin M. (2011) A role for Traf4 in polarizing adherens junctions as a prerequisite for efficient cell shape changes. Molecular and Cellular Biology 24:4978.
  11. Murphy MM, Lawson JA, Mathew SJ, Hutcheson DA, Kardon G. (2011) Satellite cells, connective tissue fibroblasts and their interactions are crucial for muscle regeneration. Development 138:3625-3637. (Featured article, Recommended by Faculty of 1000)
  12. Mathew SJ. (2011) InACTIVatINg cancer cachexia. Dis Model Mech 4:283.
  13. Mathew SJ, Hansen JM, Merrell AJ, Murphy MM, Lawson JA, Hutcheson DA, Hansen MS, Angus-Hill M, Kardon G. (2011) Connective tissue fibroblasts and Tcf4 regulate myogenesis. Development 138:371-384.
  14. Mathew SJ, Haubert D, Kronke M, Leptin M. (2009) Looking beyond death: a morphogenetic role for the TNF signalling pathway. J Cell Sci 122:1939.
  15. Mathew SJ, Kerridge S, Leptin M. (2009) A small genomic region containing several loci required for gastrulation in Drosophila. PLoS One 4:e7437

Dr. Sam J Mathew
Associate Professor
Regional Centre for Biotechnology
NCR Biotech Science Cluster
3rd Milestone, Faridabad-Gurgaon Expressway
P.O. Box No. 3, Faridabad - 121 001
Haryana (NCR Delhi), India
E-mail: sjmathew at rcb dot res dot in
Phone: 91 129-2848822

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